Alexandre Defelicibus adefelicibus

## microgpt.py
"""
The most atomic way to train and run inference for a GPT in pure, dependency-free Python.
This file is the complete algorithm.
Everything else is just efficiency.

@karpathy
"""

import os       # os.path.exists
import math     # math.log, math.exp

## README.md

      
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                lindenb
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              Last active
              July 23, 2024 20:23
            
              
                How to linearize a FASTA sequence using awk.
              
          
    Linearize a fasta sequence

awk -f linearizefasta.awk < input.fa
or
awk '/^&gt;/ {printf("%s%s\t",(N&gt;0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' &lt; input.fa

  
## GTF.py
#!/usr/bin/env python
"""
GTF.py
Kamil Slowikowski
December 24, 2013

Read GFF/GTF files. Works with gzip compressed files and pandas.

    http://useast.ensembl.org/info/website/upload/gff.html
	"""
	The most atomic way to train and run inference for a GPT in pure, dependency-free Python.
	This file is the complete algorithm.
	Everything else is just efficiency.

	@karpathy
	"""

	import os # os.path.exists
	import math # math.log, math.exp
	#!/usr/bin/env python
	"""
	GTF.py
	Kamil Slowikowski
	December 24, 2013

	Read GFF/GTF files. Works with gzip compressed files and pandas.

	http://useast.ensembl.org/info/website/upload/gff.html