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vals / GSE290106_analysed_experiment_card.md
Created November 13, 2025 07:02

analysis_date: "2025-11-12" h5ad_file: "GSE290106_analysed.h5ad" species: "Mouse (Mus musculus)" total_cells: 21417 design_type: "2×2 Nested Design (Hierarchical)" edviz_grammar: "Genotype(2) > Sample[5103|3881|7904|4537] : CellType(6)" factors:

  • genotype
  • sample
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vals / GSE166504_experiment_card.md
Created November 13, 2025 06:39

analysis_date: "2025-11-12" h5ad_file: "GSE166504.h5ad" species: "Mouse (Mus musculus)" total_cells: 82192 design_type: "Unbalanced factorial design with crossed factors" edviz_grammar: "(CellFraction(2) × DietTimepoint(4)) > Sample(38) : CellType(13)" factors:

  • cell_fraction
  • diet_timepoint
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vals / 220310 Number of donors over time.ipynb
Created March 11, 2022 03:35
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vals / Exploratory analysis with scVI.ipynb
Last active April 13, 2024 18:23
Exploratory analysis with scVI
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vals / Poisson zeros gene selection.ipynb
Created May 20, 2020 00:22
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vals / Cumulative authors.ipynb
Created May 12, 2020 01:44
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vals / Analyze HCL data.ipynb
Created March 27, 2020 03:56
Unpolished notebook resulting from making cell type dendrogram using Han et al HCL data
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vals / scVI on Clark retinal 10x data.ipynb
Created May 22, 2019 17:46
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vals / FIt-SNE vs UMAP embedding speed.ipynb
Created July 3, 2018 06:37
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vals / Buenrostro et al 2018 reanalysis.ipynb
Last active June 8, 2018 01:12
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