Tim Treis timtreis

## 10_verify_data.ipynb

      
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                timtreis
                / 10_verify_data.ipynb
            
            
              Created
              September 17, 2025 16:03
            
          
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## find_flax_version.md

      
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                timtreis
                / find_flax_version.md
            
            
              Created
              August 14, 2024 13:42
            
          
    conda create --name tmp python=3.10
mamba install scvi-tools=1.1.2 jaxlib=0.4.16 jax=0.4.16 -c conda-forge
mamba install conda-forge::flax


## read_stereoseq.py
pass

## get_legend_title.R
library("visR")

get_legend_title <- function(gg) {

  ggb <- ggplot2::ggplot_build(gg)
  ggt <- ggplot2::ggplot_gtable(ggb)

  legend_grob_id <- which(sapply(ggt$grobs, function(x) x$name) == "guide-box")
  legend_grob <- ggt$grobs[[legend_grob_id]]


## spec_helper.R
 #!/usr/bin/env Rscript

args = commandArgs(trailingOnly = TRUE)

get_all_tests = function(file_path) {

  txt = base::paste(base::readLines(file_path, warn = FALSE), collapse = "\n")
  matches = base::gregexpr("testthat::test_that\\(\\\"(.+?)\"", txt)

  return(matches)

## helpers.py
print("Successfully imported ttreis helper functions")

def rgb2hex(r,g,b):

    return "#{:02x}{:02x}{:02x}".format(r,g,b)

somsault_1 = rgb2hex(  0,   0,   0) # black
somsault_2 = rgb2hex(  0,  73,  73) # dark grey
somsault_3 = rgb2hex(  0, 146, 146) #009999, approx. "Persian Green"
somsault_4 = rgb2hex(255, 109, 182)
	library("visR")

	get_legend_title <- function(gg) {

	ggb <- ggplot2::ggplot_build(gg)
	ggt <- ggplot2::ggplot_gtable(ggb)

	legend_grob_id <- which(sapply(ggt$grobs, function(x) x$name) == "guide-box")
	legend_grob <- ggt$grobs[[legend_grob_id]]
	#!/usr/bin/env Rscript

	args = commandArgs(trailingOnly = TRUE)

	get_all_tests = function(file_path) {

	txt = base::paste(base::readLines(file_path, warn = FALSE), collapse = "\n")
	matches = base::gregexpr("testthat::test_that\\(\\\"(.+?)\"", txt)

	return(matches)
	print("Successfully imported ttreis helper functions")

	def rgb2hex(r,g,b):

	return "#{:02x}{:02x}{:02x}".format(r,g,b)

	somsault_1 = rgb2hex( 0, 0, 0) # black
	somsault_2 = rgb2hex( 0, 73, 73) # dark grey
	somsault_3 = rgb2hex( 0, 146, 146) #009999, approx. "Persian Green"
	somsault_4 = rgb2hex(255, 109, 182)