talmo

# /// script
# requires-python = ">=3.10"
# dependencies = [
#     "numpy",
#     "Pillow",
#     "imageio-ffmpeg",
#     "sleap-io",
# ]
# ///
"""Pure Python reader and converter for Norpix .seq video files.

talmo

OpenSimRoot XML Input Parameters

A comprehensive listing of all input parameters that can be specified in OpenSimRoot XML configuration files, organized by functional category.

Parameters are specified in .xml files under InputFiles/plantParameters/[Species]/[Variety]/ for plant traits, InputFiles/environments/ for soil/atmosphere, and InputFiles/templates/ for reusable module templates. All are defined using <SimulaBase>, <SimulaTable>, and <SimulaConstant> XML elements.

Total: ~196 unique parameter names across ~20 functional modules.

---

talmo

#!/usr/bin/env bash
set -euo pipefail

# Remove existing btop installs
if [ -f /usr/local/bin/btop ]; then
    echo "Removing old btop at /usr/local/bin/btop..."
    rm /usr/local/bin/btop
fi
if snap list btop &>/dev/null; then
    echo "Removing snap btop..."

talmo

Building TensorFlow without AVX/AVX2 instructions

Overview

This describes steps to build a CPU-only TensorFlow wheel (.whl) without AVX/AVX2 instructions so it can be installed on machines with older CPUs that do not support AVX/AVX2 instructions (e.g., Intel Celeron N2830).

This solves errors that you might get when installing or importing TensorFlow that might say:

Illegal instruction (core dumped)

or

talmo

% Clean start!
clear all, clc

%% Parameters
% Path to input file
dataPath = '../data/examples/072212_163153.clip.h5';

% Dataset name
dset = '/box';

talmo

% Clean start!
clear all, clc

%% Parameters
% Path to input file
videoPath = '..\..\leap\data\examples\072212_163153.clip.mp4';

% Path to output file
% savePath = '..\..\leap\data\examples\072212_163153.clip.h5';
savePath = 'C:\tmp\072212_163153.clip.h5';

talmo

1>------ Build started: Project: ITK, Configuration: Release x64 ------
2>------ Build started: Project: Swig, Configuration: Release x64 ------
3>------ Build started: Project: elastix, Configuration: Release x64 ------
4>------ Build started: Project: SimpleITK, Configuration: Release x64 ------
4>  Building Custom Rule C:/Toolbox/SimpleElastix/SuperBuild/CMakeLists.txt
4>  CMake does not need to re-run because C:\se\CMakeFiles\generate.stamp is up-to-date.
4>  Creating directories for 'SimpleITK'
4>  No download step for 'SimpleITK'
4>  No update step for 'SimpleITK'
4>  No patch step for 'SimpleITK'

talmo

[ 16%] Built target ITK
[ 32%] Built target PCRE
[ 48%] Built target Swig
[ 65%] Built target elastix
[ 67%] Performing forcebuild step for 'SimpleITK'
[ 69%] Performing build step for 'SimpleITK'
[  9%] Built target SimpleITKData
[ 10%] Built target lua5
[ 10%] Built target lua
[ 10%] Built target SimpleITKExplicit