Skip to content

Instantly share code, notes, and snippets.

View ssiddhantsharma's full-sized avatar
🥼
Going Remote!

Siddhant Sharma ssiddhantsharma

🥼
Going Remote!
View GitHub Profile
@ssiddhantsharma
ssiddhantsharma / fixed_res_lmpnn.py
Created October 17, 2025 13:26
fixed residues ligand_mpnn using prody/mda
import numpy as np
from typing import List, Set, Tuple, Optional
def detect_binding_interface_mda(pdb_file: str,
protease_chain: str,
peptide_chain: str,
distance: float = 8.0,
immutable_positions: Optional[str] = None) -> Tuple[List[int], List[int], str]:
import MDAnalysis as mda