mkarmona

import $ivy.`com.github.pathikrit::better-files:3.9.1`
import better.files._

object OpenTargets {
  case class Timestamp(h: Int, m: Int, s: Int, mm: Int) {
    override def toString: String = f"$h%02d:$m%02d:$s%02d,$mm%03d"
  }
  object SRTTransformer {
    def transformTime(s: String): Seq[Timestamp] =
      s.split("-").map(t => t.trim.split(":").map(_.toInt).toList match {

mkarmona

import coursierapi._

interp.repositories() ++= Seq(
  MavenRepository
    .of("http://dl.bintray.com/spark-packages/maven")
)

mkarmona

#!/bin/bash

mkdir ~/.ammonite
git clone https://github.com/tmux-plugins/tpm ~/.tmux/plugins/tpm
wget https://raw.githubusercontent.com/mkarmona/rc/master/.tmux.conf -O ~/.tmux.conf
wget https://raw.githubusercontent.com/mkarmona/rc/master/.ammonite/resolvers.sc -O ~/.ammonite/resolvers.sc
wget https://raw.githubusercontent.com/mkarmona/rc/master/.ammonite/shell.sc -O ~/.ammonite/shell.sc
wget https://raw.githubusercontent.com/mkarmona/rc/master/.ammonite/spark.sc -O ~/.ammonite/spark.sc
wget https://raw.githubusercontent.com/mkarmona/rc/master/.ammonite/spark-cluster.sc -O ~/.ammonite/spark-cluster.sc
wget https://raw.githubusercontent.com/mkarmona/rc/master/.ammonite/spark-nlp.sc -O ~/.ammonite/spark-nlp.sc

mkarmona

import graph;
usepackage("kpfonts");
size(10cm, 7cm, IgnoreAspect);
scale(Linear, Log);

real [] x1={32,48,64,80,96, 112, 128};
real [] y1={1451,532,504,343,288,271,250};

real [] x2={16,32,64,96};
real [] y2={1304,797,543,343};

mkarmona

curl http://r2.finngen.fi/api/phenos | jq -r '.[]| @json' > r2_finngen.json

mkarmona

directive @cacheControl(maxAge: Int, scope: CacheControlScope) on FIELD_DEFINITION | OBJECT | INTERFACE

type Abstract {
  title: String!
}

type AdverseEventRow {
  event: String!
  count: Int!
  llr: Float!

mkarmona

# exec(open('GetAdverseEventsForOTdrugs.py').read())

import requests
import json

# Drug names are keys in all three dictionaries
Drugs = {} # Count of the different adverse events per drug
DrugsAE = {} # The adverse events for each drug
Drugs_ChEMBLID = {} # Drug name to ChEMBL ID mapping

mkarmona

#!/bin/bash

apt-get update && DEBIAN_FRONTEND=noninteractive \
    apt-get \
    -o Dpkg::Options::="--force-confnew" \
    --force-yes \
    -fuy \
    dist-upgrade && \
    DEBIAN_FRONTEND=noninteractive \
    apt-get \

mkarmona

# This tmux statusbar config was created based on gruvbox colorscheme

set -g status "on"
# remap prefix from 'C-b' to 'C-a'
unbind C-b
# set-option -g prefix C-a
set-option -g prefix M-x
# bind-key C-a send-prefix
bind-key M-x send-prefix

mkarmona

buildscript {
    ext.kotlin_version = '1.0.5'

    repositories {
        mavenCentral()
    }
    dependencies {
        classpath "org.jetbrains.kotlin:kotlin-gradle-plugin:$kotlin_version"
        classpath 'org.springframework.boot:spring-boot-gradle-plugin:1.4.2.RELEASE'
        classpath "com.google.cloud.tools:appengine-gradle-plugin:+"