Pymol scripts for TALE-DNA structure movie

pymol scripts

set matrix_mode, 1
load ~/Dropbox/talen/3ugm.pdb

create DNA, /3UGM//B/ or /3UGM//C
create TALECARTOON, /3UGM//A/
create TALE, /3UGM//A/
create HD1, /3UGM//A/334-335/
create HD2, /3UGM//A/368-369/

set cartoon_ring_mode,1
spectrum count,rainbow, TALE
spectrum count,rainbow, TALECARTOON
bg_color white
hide all
as cartoon, DNA
set cartoon_oval_width, 0.07
set cartoon_oval_length, 1
set_view (\
     0.917161584,    0.035160903,    0.396963686,\
    -0.073943011,    0.993817449,    0.082813837,\
    -0.391597897,   -0.105305314,    0.914089859,\
     0.000000000,    0.000000000, -398.607299805,\
    -2.612998962,   57.615203857,  -11.957862854,\
   321.190734863,  476.023925781,  -20.000000000 )
scene DNA, store

hide all
as cartoon, DNA
as cartoon, TALECARTOON
set_view (\
     0.917161584,    0.035160903,    0.396963686,\
    -0.073943011,    0.993817449,    0.082813837,\
    -0.391597897,   -0.105305314,    0.914089859,\
     0.000000000,    0.000000000, -398.607299805,\
    -2.612998962,   57.615203857,  -11.957862854,\
   321.190734863,  476.023925781,  -20.000000000 )
scene DNATALE1, store


hide all
as cartoon, DNA
as cartoon, TALECARTOON
as surface, TALE
set transparency, 0.3
set_view (\
     0.917161584,    0.035160903,    0.396963686,\
    -0.073943011,    0.993817449,    0.082813837,\
    -0.391597897,   -0.105305314,    0.914089859,\
     0.000000000,    0.000000000, -398.607299805,\
    -2.612998962,   57.615203857,  -11.957862854,\
   321.190734863,  476.023925781,  -20.000000000 )
scene DNATALE2, store


hide all
as cartoon, DNA
as cartoon, TALECARTOON
as surface, TALE
set transparency, 0.3
set_view (\
     0.917161584,    0.035160903,    0.396963686,\
    -0.073943011,    0.993817449,    0.082813837,\
    -0.391597897,   -0.105305314,    0.914089859,\
     0.000000000,    0.000000000, -398.607299805,\
    -2.612998962,   57.615203857,  -11.957862854,\
   321.190734863,  476.023925781,  -20.000000000 )
scene rotate1, store

hide all
as cartoon, DNA
as cartoon, TALECARTOON
as surface, TALE
set transparency, 0.3
set_view (\
    -0.221848860,    0.040818494,    0.974225879,\
    -0.048463572,    0.997427225,   -0.052826583,\
    -0.973876059,   -0.058934011,   -0.219299749,\
     0.000000000,    0.000000000, -398.607299805,\
    -2.612998962,   57.615203857,  -11.957862854,\
   321.190734863,  476.023925781,  -20.000000000 )
scene rotate2, store


hide all
as cartoon, DNA
as cartoon, TALECARTOON
as surface, TALE
set transparency, 0.3
set_view (\
    -0.994272649,    0.056723613,   -0.090576209,\
     0.064241268,    0.994530082,   -0.082360663,\
     0.085408673,   -0.087707609,   -0.992478251,\
     0.000000000,    0.000000000, -398.607299805,\
    -2.612998962,   57.615203857,  -11.957862854,\
   321.190734863,  476.023925781,  -20.000000000 )
scene rotate3, store


hide all
as cartoon, DNA
as cartoon, TALECARTOON
as surface, TALE
set transparency, 0.3
### cut below here and paste into script ###
set_view (\
     0.583561420,    0.066711508,   -0.809323728,\
     0.063115351,    0.989879608,    0.127103716,\
     0.809612572,   -0.125253588,    0.573444724,\
     0.000000000,    0.000000000, -398.607299805,\
    -2.612998962,   57.615203857,  -11.957862854,\
   321.190734863,  476.023925781,  -20.000000000 )
scene rotate4, store

hide all
as cartoon, DNA
as cartoon, TALECARTOON
as stick, HD1
label n. CA and HD1, resn, resi
set label_position,(1,-3,3)
set_view (\
     0.669072568,    0.098997362,    0.736572385,\
     0.607038200,    0.498988479,   -0.618475378,\
    -0.428770632,    0.860934496,    0.273765475,\
     0.000000000,    0.000000000,  -61.022392273,\
   -11.458999634,   91.259002686,  -10.211000443,\
    51.841697693,   70.203086853,  -20.000001907 )
scene HD1, store


mset 1 x 550
frame 1
mview store, scene=DNA
frame 50
mview store, scene=DNATALE1
frame 100
mview storem scene=DNATALE2
frame 150
mview store, scene=rotate1
frame 200
mview store, scene=rotate2
frame 250
mview store, scene=rotate3
frame 300
mview store, scene=rotate4
frame 350
mview store, scene=rotate1
frame 400
mview store, scene=HD1
frame 450
mview store, scene=HD1
frame 500
mview store, scene=HD1
frame 550
mview store, scene=rotate

mview interpolate
mview smooth
set cache_frames, 1
set ray_shadows, 1
set mesh_width, 0.25
set ray_trace_frame, 1
mplay