macmanes

tmux cheat sheet

(C-x means ctrl+x, M-x means alt+x)

Prefix key

The default prefix is C-b. If you (or your muscle memory) prefer C-a, you need to add this to ~/.tmux.conf:

remap prefix to Control + a

macmanes

define run_fastqc

$$(addsuffix .ok,$(1)) : $(1)
	mkdir -p $$(dir $$@) ∧ \
	unzip -p $$< $$(addsuffix .tmp_fastqc/fastqc_data.txt,$$(notdir $$<)) |\
		grep ">>" | grep -v ">>END_MODULE" | cut -c 3- |\
		awk -F '	' 'BEGIN{N=0;} {if(($$$$1=="Basic Statistics" || $$$$1=="Per base sequence quality" || $$$$1=="Per base N content") ∧ $$$$2=="pass" ) N++;} END { if(N>2) {print "__PASS__"}}' |\
		grep __PASS__ ∧ echo "FASTQC ok for $$<" $$@
		

macmanes

#!/bin/bash

# Script for installing tmux on systems where you don't have root access.
# tmux will be installed in $HOME/local/bin.
# It's assumed that wget and a C/C++ compiler are installed.

# exit on error
set -e

TMUX_VERSION=1.8