linhai86

#!/bin/bash -e

remote_repo=""
gp_branch="gh-pages"
publish_dir="_build/html"

# Build Sphinx doc
echo "Build documentation."
rm -rf ${publish_dir}
make html

linhai86

Copy paste the following script, replace the following variables:

• OLD_EMAIL
• CORRECT_NAME
• CORRECT_EMAIL

#!/bin/sh

git filter-branch --env-filter '

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import requests

class Mut2Seq:
    """Given mutation, extract flanking protein sequence using Ensembl API.
    """
    def __init__(self, server='https://rest.ensembl.org',
        species='homo_sapiens'):
        self.server = server
        self.species = species

linhai86

Simple script to capture webcam and detect faces.

import cv2

def capture_webcam():
    face_cascade = cv2.CascadeClassifier('haarcascade_frontalface_default.xml')
    cap = cv2.VideoCapture(0)

 while(True):

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Introduction

Lifecycles consist of phases, which can invoke a set of configured goals provided by certain plugins.

built-in build lifecycles:

• default: handles your project deployment.
• clean: handles project cleaning.
• site: handles the creation of your project's site documentation.

default lifecycle comprises of the following main phases:

• validate - validate the project is correct and all necessary information is available

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Build

docker build -t username/repository:tag .

Ship

docker login my.registry.com:8000

docker tag <image> username/repository:tag

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Create personal library directory and set it to default in Rstudio Server:

# Create .Rprofile file in the home folder and insert the following code:

.libPaths(c("/home/users/linh35/R/x86_64-pc-linux-gnu-library/3.2", .libPaths()))

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Reset Rstudio Server for a specific user.

My RStudio Server freezes after I login and the IT couldn't solve it.

1. Find the ip address of the server

nslookup <hostname>

2. SSH to the server

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# To re-config CPAN
cpan> o conf init

# To install packages with local::lib
perl -MCPAN -Mlocal::lib -e shell
cpan> install Statistics::R

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conda info
conda update conda
conda update anaconda

conda info --envs                             # List all environments.
conda list                                    # List all packages and versions installed in active environment.
conda create --prefix ~/bio-env biopython     # Create an environment named bio-env in your home directory and install the biopython.
conda create --name bio-env biopython         # Create an environment in default directory.
source activate ~/bio-env                     # Activate env.