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November 27, 2025 13:13
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(partial) EasyBuild log for failed build of /tmp/eb-k6xcse14/files_pr23719/l/LAMMPS/LAMMPS-29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.eb (PR(s) #23719) (easyblock PR(s) #3894)
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| == 2025-11-27 14:13:57,956 easyblock.py:3541 DEBUG Output of 'cuobjdump' checked for '/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/LAMMPS/29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0/lib/python3.12/site-packages/lammps/liblammps.so'; device code architectures match those in cuda_compute_capabilities | |
| == 2025-11-27 14:13:57,956 easyblock.py:3641 DEBUG Output of 'cuobjdump' checked for '/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/LAMMPS/29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0/lib/python3.12/site-packages/lammps/liblammps.so'; ptx code was present for (at least) the highest CUDA compute capability in cuda_compute_capabilities | |
| == 2025-11-27 14:13:57,956 easyblock.py:3645 INFO CUDA sanity check summary report: | |
| == 2025-11-27 14:13:57,958 easyblock.py:3645 INFO Number of CUDA files checked: 5 | |
| == 2025-11-27 14:13:57,959 easyblock.py:3645 INFO Number of files missing one or more CUDA Compute Capabilities: 0 | |
| == 2025-11-27 14:13:57,960 easyblock.py:3645 INFO Number of files with device code for more CUDA Compute Capabilities than requested: 0 | |
| == 2025-11-27 14:13:57,961 easyblock.py:3645 INFO Number of files missing PTX code for the highest configured CUDA Compute Capability: 0 | |
| == 2025-11-27 14:13:57,968 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/base/exceptions.py:126 in __init__): Sanity check failed: sanity check command cd /tmp/eb-k6xcse14/tmpa8ks8bdv && mpirun -n 4 python -c 'from lammps import lammps; l=lammps(cmdargs=["-sf", "intel"]).file("/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/LAMMPS/29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0/examples/msst/in.msst") if "INTEL" in lammps().installed_packages else None; l.finalize() if l else None' failed with exit code 1 (output: LAMMPS (29 Aug 2024 - Update 2) | |
| OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) | |
| using 1 OpenMP thread(s) per MPI task | |
| Total wall time: 0:00:00 | |
| -------------------------------------------------------------------------- | |
| prterun has exited due to process rank 0 with PID 1803598 on node node4303 exiting | |
| improperly. There are three reasons this could occur: | |
| 1. this process did not call "init" before exiting, but others in the | |
| job did. This can cause a job to hang indefinitely while it waits for | |
| all processes to call "init". By rule, if one process calls "init", | |
| then ALL processes must call "init" prior to termination. | |
| 2. this process called "init", but exited without calling "finalize". | |
| By rule, all processes that call "init" MUST call "finalize" prior to | |
| exiting or it will be considered an "abnormal termination" | |
| 3. this process called "MPI_Abort" or "prte_abort" and the mca | |
| parameter prte_create_session_dirs is set to false. In this case, the | |
| run-time cannot detect that the abort call was an abnormal | |
| termination. Hence, the only error message you will receive is this | |
| one. | |
| This may have caused other processes in the application to be | |
| terminated by signals sent by prterun (as reported here). | |
| You can avoid this message by specifying -quiet on the prterun command | |
| line. | |
| -------------------------------------------------------------------------- | |
| ) (at easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/framework/easyblock.py:4404 in _sanity_check_step) | |
| == 2025-11-27 14:13:57,968 build_log.py:322 INFO ... (took 1 min 7 secs) | |
| == 2025-11-27 14:13:57,970 config.py:772 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software | |
| == 2025-11-27 14:13:57,970 filetools.py:2152 INFO Removing lock /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_LAMMPS_29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.lock... | |
| == 2025-11-27 14:13:57,971 filetools.py:423 INFO Path /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_LAMMPS_29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.lock successfully removed. | |
| == 2025-11-27 14:13:57,971 filetools.py:2156 INFO Lock removed: /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_LAMMPS_29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.lock | |
| == 2025-11-27 14:13:57,971 easyblock.py:389 INFO Closing log for application name LAMMPS version 29Aug2024_update2 |
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