Ian Maurer imaurer

## claude-code-tools.md

      
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                imaurer
                / claude-code-tools.md
            
            
              Created
              January 10, 2026 10:15
                — forked from wong2/claude-code-tools.md
            
              
                Tools and system prompt of Claude Code
              
          
    Task

Launch a new agent that has access to the following tools: Bash, Glob, Grep, LS, exit_plan_mode, Read, Edit, MultiEdit, Write, NotebookRead, NotebookEdit, WebFetch, TodoRead, TodoWrite, WebSearch. When you are searching for a keyword or file and are not confident that you will find the right match in the first few tries, use the Agent tool to perform the search for you.
When to use the Agent tool:

If you are searching for a keyword like "config" or "logger", or for questions like "which file does X?", the Agent tool is strongly recommended

When NOT to use the Agent tool:

If you want to read a specific file path, use the Read or Glob tool instead of the Agent tool, to find the match more quickly
If you are searching for a specific class definition like "class Foo", use the Glob tool instead, to find the match more quickly
If you are searching for code within a specific file or set of 2-3 files, use the Read tool instead of the Agent tool, to find the match more quickly


## create-cli-skill.md

      
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                imaurer
                / create-cli-skill.md
            
            
              Created
              December 31, 2025 20:00
            
              
                Use https://clig.dev/ to improve @steipete’s CLI skill prompt
              
          
    prompt chatgpt 5.2 pro (12/31/2025)

How would you improve the prompt based on the below document? Be explicit, provide detailed analysis of what's missing, what could be better, what would be tweaked. And then after all your analysis and bullet points, give me the new prompt.
original skill

https://github.com/steipete/agent-scripts/blob/main/skills/create-cli/SKILL.md
document


## determine-pydantic-version.md

      
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                imaurer
                / determine-pydantic-version.md
            
            
              Created
              October 28, 2025 10:38
            
          
    Determining the Minimum Supported Pydantic Version (Binary Cut)

This note documents how we determined the lowest Pydantic 2.x version that
works across our supported Python versions (3.10–3.14) using uv and pytest.
It also records the final requirement change made to pyproject.toml.
Objective


Identify the minimum Pydantic version that passes our test suite across
Python 3.10, 3.11, 3.12, 3.13, and 3.14.
Update our dependency constraint accordingly.


## test-docs.py
# File: run.py

#!/usr/bin/env python3
"""
Working demonstration of the BioMCP API with actual function calls.
This shows the corrected API in action.
"""

import asyncio
from biomcp.variants.search import (

## llm_tools_with_schema.md

      
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                imaurer
                / llm_tools_with_schema.md
            
            
              Last active
              May 29, 2025 16:08
            
          
    GitHub Issue: Enable Schema-Formatted Output for Tool-Using Chains
1. Problem:
Currently, the llm CLI's --schema option applies to the direct output of a single Language Model (LLM) call. When tools (via --tool or --functions) are used, the LLM engages in a multi-step chain (e.g., ReAct pattern) where intermediate outputs are tool call requests or textual reasoning. There's no direct way to specify that the final, user-visible result of such a multi-step, tool-using chain should conform to a user-defined schema. The existing --schema option doesn't automatically apply to the culmination of this chain.
2. Alternatives Considered:

A. New CLI Option: Introducing a distinct option (e.g., --final-schema or --output-schema) specifically for specifying the schema of the final output after a tool chain. This would keep the existing --schema behavior for direct, single-turn schema output and make the post-chain formatting explicit.
**B. Overload Existing --schema (Implic


## llm_mcp_demo.sh
# Demo output - assume llm 0.26 installed and in path
#
# llm-mcp repo:
#   https://github.com/genomoncology/llm-mcp
#
# includes:
# - Desktop Command (local MCP): https://desktopcommander.app/
# - Git MCP for simonw/llm: https://gitmcp.io/simonw/llm (auth-less remote example)
#
# version 0.0.2

## clean_text.py
#!/usr/bin/env -S uv --quiet run --script
# /// script
# requires-python = ">=3.11"
# dependencies = [
#     "typer",
# ]
# ///
"""
Clean Text: Unicode Hyphen and Space Normalizer

## NIH-Funding-Papers-Impact.md

      
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                imaurer
                / NIH-Funding-Papers-Impact.md
            
            
              Created
              May 1, 2025 19:27
            
          
    You

What does this change https://grants.nih.gov/grants/guide/notice-files/NOT-OD-25-047.html

ChatGPT

Bottom-line: NIH’s new Public Access Policy (NOT-OD-25-047) scraps the 12-month waiting period and makes every NIH-funded paper publicly available immediately at publication, starting with manuscripts accepted on or after December 31 2025.

  
## mp3_player.html
<!-- `https://api.substack.com/feed/podcast/160495909/bdd3acc7cd18a69c68ad250654009252.mp3` -->
<!DOCTYPE html>
<html lang="en">
<head>
    <meta charset="UTF-8">
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
    <title>Podcast MP3 Player</title>
    <style>
        body {
            font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;

## icon_slicer.py
#!/usr/bin/env -S uv --quiet run --script
# /// script
# requires-python = ">=3.11"
# dependencies = [
#     "pyahocorasick",
# ]
# ///

"""
Icon Slicer Script
	# File: run.py

	#!/usr/bin/env python3
	"""
	Working demonstration of the BioMCP API with actual function calls.
	This shows the corrected API in action.
	"""

	import asyncio
	from biomcp.variants.search import (
	# Demo output - assume llm 0.26 installed and in path
	#
	# llm-mcp repo:
	# https://github.com/genomoncology/llm-mcp
	#
	# includes:
	# - Desktop Command (local MCP): https://desktopcommander.app/
	# - Git MCP for simonw/llm: https://gitmcp.io/simonw/llm (auth-less remote example)
	#
	# version 0.0.2
	#!/usr/bin/env -S uv --quiet run --script
	# /// script
	# requires-python = ">=3.11"
	# dependencies = [
	# "typer",
	# ]
	# ///
	"""
	Clean Text: Unicode Hyphen and Space Normalizer
	<!-- `https://api.substack.com/feed/podcast/160495909/bdd3acc7cd18a69c68ad250654009252.mp3` -->
	<!DOCTYPE html>
	<html lang="en">
	<head>
	<meta charset="UTF-8">
	<meta name="viewport" content="width=device-width, initial-scale=1.0">
	<title>Podcast MP3 Player</title>
	<style>
	body {
	font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;