Last active
January 8, 2026 17:30
-
-
Save cthoyt/f38d37426a288989158a9804f74e731a to your computer and use it in GitHub Desktop.
Demonstrate using sssom-pydantic to convert SSSOM to Wikidata
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # /// script | |
| # requires-python = ">=3.10" | |
| # dependencies = [ | |
| # "sssom-pydantic[wikidata]>=0.1.18", | |
| # ] | |
| # /// | |
| from urllib.request import urlretrieve | |
| from sssom_pydantic.contrib.wikidata import read_and_open_quickstatements | |
| url = "https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.tsv" | |
| path = "biomappings.sssom.tsv" | |
| urlretrieve(url, path) | |
| read_and_open_quickstatements(path) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment