CAVEATS APPLY

pylint_inline_python_of_wdl.sh

YOUR_WDL_FILE=share_projects_with_team.wdl

tmpfile=$(mktemp /tmp/wdl_lint_XXXX.py)
awk '/python3 << CODE/{flag=1;next}/CODE/{flag=0}flag' "$YOUR_WDL_FILE" | sed 's/^\t\t//' | sed -E 's/~\{[^}]+\}/1/g' > "$tmpfile"
pylint --indent-string="\t" "$tmpfile"
rm /tmp/wdl_lint_XXXX.py

# ASSUMPTIONS:
# * WDL is tab indented
# * WDL command section's starting indentation is two tabs
# * Python is tab-indented (PEP-8? Never heard of her!)
# * You only use ~{the_much_cooler} syntax for WDL variables instead of ${this_nonsense} (implies WDL 1.0+)
# * All WDL variables can be replaced by int literal 1 to stop pylint from freaking out when it sees a tilde
# * No $INLINE_BASH_VARIABLES in your Python code