annawoodard

"""Project quota runout trajectory from slash-status style text.

Quick launcher install (so you can run `quota-trajectory ...`):

    # Run these commands from the directory containing quota_trajectory.py.
    SCRIPT_PATH="$(realpath ./quota_trajectory.py)"
    cat > ~/bin/quota-trajectory <<'BASH'
    #!/usr/bin/env bash
    exec python3 "__QUOTA_TRAJECTORY_PATH__" "$@"
    BASH

annawoodard

import os
import subprocess
import time
from concurrent.futures import ThreadPoolExecutor, as_completed
from pathlib import Path
from typing import Callable, Sequence

PROGRESS_BAR_WIDTH = 28

__all__ = ["parallel_rsync_copy"]

annawoodard

def restart_from_checkpoint(checkpoint_path, restore_objects=None, **kwargs):
    """
    Re-start training or inference from a previous checkpoint.

    Args:
        checkpoint_path (str): Path to checkpoint file
        restore_objects (dict): Dict containing objects to reload from checkpoint
        **kwargs (dict): Keyword args containing model states to reload

    Returns:

annawoodard

from scipy.stats import norm


def detectable_difference(alpha, power, proportion, n_positives):
    """
    Calculate the detectable difference in proportions for a given sample size, power, significance level, and proportion.

    Parameters:
    alpha: Significance level
    power: Desired power of the test

annawoodard

annawoodard

LOCK_NAME="chimec_sync"
LOCK_DIR='/tmp/'${LOCK_NAME}.lock
PID_FILE=${LOCK_DIR}'/'${LOCK_NAME}'.pid'

if mkdir ${LOCK_DIR} 2>/dev/null; then
  # If the ${LOCK_DIR} doesn't exist, then start working & store the ${PID_FILE}
  echo $$ > ${PID_FILE}

  rsync --remove-source-files -avPz  /mnt/hiro/ t.cri.awoodard@gardner.cri.uchicago.edu:/gpfs/data/huo-lab/Image/ChiMEC/ >& /home/annawoodard/rsync.log
  rm -rf ${LOCK_DIR}

annawoodard

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annawoodard