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May 17, 2022 17:37
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| S000 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
|---|---|---|---|---|---|---|---|
| S002 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S002 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S003 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S004 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S005 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S006 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S007 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S008 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S009 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S010 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S012 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S012 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S013 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S014 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S015 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S016 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S017 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S018 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S019 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S020 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S022 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S022 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S023 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S024 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S025 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S026 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S027 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S028 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S029 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S030 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S032 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S032 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S033 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S034 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S035 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S036 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S037 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S038 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S039 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S040 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S042 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S042 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S043 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S044 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S045 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S046 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S047 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S048 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S049 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S050 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S052 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S052 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S053 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S054 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S055 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S056 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S057 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S058 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S059 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S060 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S062 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S062 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S063 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S064 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S065 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S066 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S067 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S068 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S069 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S070 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S072 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S072 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S073 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S074 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S075 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S076 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S077 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S078 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S079 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S080 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S082 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S082 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S083 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S084 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S085 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S086 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S087 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S088 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S089 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S090 | XX | 0 | 1234N | 1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S092 | XX | 0 | 1234N | 1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S092 | XX | 0 | 1234N | 1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S093 | XX | 0 | 1234N | 1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S094 | XX | 0 | 1234N | 1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S095 | XX | 0 | 1234N | 1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S096 | XX | 1 | 9876T | 9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S097 | XX | 1 | 9876T | 9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S098 | XX | 1 | 9876T | 9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S099 | XX | 1 | 9876T | 9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz |
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