Created
December 26, 2024 08:26
-
-
Save lan496/3ef3310f40f11e811f71c84e6055be89 to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "cells": [ | |
| { | |
| "cell_type": "code", | |
| "execution_count": 7, | |
| "metadata": {}, | |
| "outputs": [], | |
| "source": [ | |
| "from pymatgen.core.lattice import Lattice\n", | |
| "from pymatgen.core.structure import Structure\n", | |
| "\n", | |
| "# create our crystal structure using pymatgen\n", | |
| "structure = Structure(Lattice.cubic(4.2), [\"Na\", \"K\"], [[0, 0, 0], [0.5, 0.5, 0.5]])" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": 10, | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "data": { | |
| "text/html": [ | |
| "\n", | |
| " <iframe\n", | |
| " width=\"100%\"\n", | |
| " height=\"650\"\n", | |
| " src=\"http://127.0.0.1:8884/\"\n", | |
| " frameborder=\"0\"\n", | |
| " allowfullscreen\n", | |
| " \n", | |
| " ></iframe>\n", | |
| " " | |
| ], | |
| "text/plain": [ | |
| "<IPython.lib.display.IFrame at 0x1522e4f50>" | |
| ] | |
| }, | |
| "metadata": {}, | |
| "output_type": "display_data" | |
| } | |
| ], | |
| "source": [ | |
| "from crystal_toolkit.renderables.structuregraph import StructureGraph\n", | |
| "from pymatgen.analysis.local_env import CrystalNN\n", | |
| "\n", | |
| "graph = StructureGraph.from_local_env_strategy(structure * (2, 2, 2), CrystalNN())\n", | |
| "graph" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": null, | |
| "metadata": {}, | |
| "outputs": [], | |
| "source": [] | |
| } | |
| ], | |
| "metadata": { | |
| "kernelspec": { | |
| "display_name": "sandbox", | |
| "language": "python", | |
| "name": "python3" | |
| }, | |
| "language_info": { | |
| "codemirror_mode": { | |
| "name": "ipython", | |
| "version": 3 | |
| }, | |
| "file_extension": ".py", | |
| "mimetype": "text/x-python", | |
| "name": "python", | |
| "nbconvert_exporter": "python", | |
| "pygments_lexer": "ipython3", | |
| "version": "3.11.9" | |
| } | |
| }, | |
| "nbformat": 4, | |
| "nbformat_minor": 2 | |
| } |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment